Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs111702333 | chr8:50763962 | T/C | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |
| BLCA | rs112192098 | chr17:18221811 | G/A | 1.84E-8 | 211 | 9.95 | 7.35 | 2.07 | KM Plot |
| BLCA | rs112298472 | chr8:50764058 | G/A | 2.59E-5 | 215 | 10.33 | 9.25 | 1.87 | KM Plot |
| BLCA | rs112772116 | chr8:50797332 | C/G | 2.44E-5 | 216 | 10.13 | 9.25 | 1.87 | KM Plot |
| BLCA | rs113139405 | chr8:50740426 | T/G | 0 | 212 | 10.67 | 8.08 | 0.1 | KM Plot |
| BLCA | rs113234496 | chr15:40981504 | C/G | 2.17E-6 | 215 | 10.68 | 6.97 | 6.13 | KM Plot |
| BLCA | rs113514814 | chr15:41000340 | C/T | 2.15E-6 | 214 | 10.68 | 7.43 | 5.43 | KM Plot |
| BLCA | rs113528256 | chr4:170638891 | ACT/A | 1.91E-8 | 212 | 9.05 | 11.47 | 0.57 | KM Plot |
| BLCA | rs113721422 | chr16:530720 | G/A | 2.37E-8 | 212 | 10.53 | 6.8 | 2.12 | KM Plot |
| BLCA | rs114064417 | chr1:103146341 | T/C | 0 | 214 | 8.97 | 15.17 | 2.07 | KM Plot |
| BLCA | rs114753428 | chr15:40953650 | A/G | 3.94E-6 | 213 | 10.72 | 6.77 | 6.13 | KM Plot |
| BLCA | rs114792073 | chr8:50758300 | A/C | 2.59E-5 | 215 | 10.33 | 9.25 | 1.87 | KM Plot |
| BLCA | rs114851468 | chr15:40925398 | G/A | 4.13E-6 | 214 | 10.72 | 6.67 | 6.13 | KM Plot |
| BLCA | rs1152611 | chr11:65091838 | C/A | 0 | 215 | 8.87 | 12.33 | 2.73 | KM Plot |
| BLCA | rs11613636 | chr12:5434788 | A/T | 0 | 207 | 8.95 | 10.88 | 1.87 | KM Plot |